I think the idea is that the migration instinct passed down by wild salmon is an epigenetic heritable trait. This trait is strongly selected for in wild salmon populations, but not in farmed populations. The constant influx of this maladaptive trait into the wild population is leading to an overall decrease in the ability of the wild population to successfully propagate.
That's surprisingly easy. It's been done for chickens. All that was necessary was to put groups of chickens in cages, and keep only the cage groups that were the best egg-layers. After only a few generations, chicken-on-chicken violence was way down.